Swayam Prakash

Curriculum vitae

Swayam Prakash, MS, PhD, FACSc, FRSB. Assistant Researcher, Department of Ophthalmology, School of Medicine, University of California, Irvine. fswayamp@hs.uci.edu; swayam.immunogenetics@gmail.com; LinkedIn. Updated November 2026.

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Profile

Immunologist and vaccine scientist integrating human immunogenetics, T-cell and mucosal immunology, multi-omics, computational biology, artificial intelligence and preclinical models to develop vaccines and immunotherapies for emerging and persistent viral diseases.

Appointments

  • 2024 to dateAssistant Researcher (Assistant Research Professor rank, non-tenured), Department of Ophthalmology, School of Medicine, University of California, Irvine, USA
  • 2023 to 2024Associate Specialist, Cellular and Molecular Immunology Laboratory, Department of Ophthalmology, School of Medicine, University of California, Irvine, USA
  • 2018 to 2023Postdoctoral Fellow, Department of Immunology, School of Medicine, University of California, Irvine, USA
  • 2016 to 2017Visiting Fellow, Histocompatibility Laboratory, Institute of Immunology, University Hospital Essen, Germany
  • 2015 to 2018Research Associate, Department of Nephrology and Renal Transplantation, Sanjay Gandhi Postgraduate Institute of Medical Sciences (SGPGIMS), Lucknow, India
  • 2014 to 2015Senior Research Fellow, Department of Nephrology and Renal Transplantation, SGPGIMS, Lucknow, India
  • 2012 to 2014Junior Research Fellow, Department of Medical Genetics, SGPGIMS, Lucknow, India

Education

  • 2026Master of Information and Data Science (MIDS), School of Information, University of California, Berkeley, USA
  • 2026Master of Science in Artificial Intelligence, Woolf, through the Udacity Institute of AI and Technology
  • 2026Executive Education, AI and digital transformation, Harvard Business School, USA
  • 2015PhD, Biotechnology, Department of Medical Genetics, SGPGIMS, Lucknow, India. Advisor: Prof. Suraksha Agrawal. Thesis: Molecular profiling of the killer immunoglobulin-like receptors (KIRs) and their HLA class I ligands, and their clinical relevance to end-stage renal disease.
  • 2010MSc, Biotechnology, Utkal University, Bhubaneswar, India. Advisor: Prof. Kalpana Dash. Thesis: Genetic diversity of KIR genes of natural killer cells among North Indians.
  • 2008BSc, Biotechnology, Utkal University, Bhubaneswar, India

Honors and fellowships

  • 2026Fellow, Royal Society of Biology (FRSB)
  • 2026Fellow, American Association of Clinical Scientists (FACSc)
  • 2024Elected full member, Sigma Xi, The Scientific Research Honor Society
  • 2014Senior Research Fellowship, Indian Council of Medical Research
  • 2012Junior Research Fellowship, Department of Science and Technology, India

Research funding

  • 202520/20 Society Pilot Research Grant, Gavin Herbert Eye Institute, UC Irvine. Role: PI. HSV-1 latency-associated novel biomarker screening for recurrent ocular herpes. Funded.
  • 2026Multiple NIH proposals (R01, R21 and R43; NIAID and NIMH) as PI or Co-PI on universal coronavirus vaccines, cross-protective T cells against RSV and SARS-CoV-2, AI-informed vaccine design, Long COVID therapeutics and herpes latency. Under review; details on request.

Teaching and mentoring

  • 2018 to datePrimary supervisor for more than 30 undergraduate researchers in the UCI Bio 199 program, several now in MD and DDS/DMD programs; mentoring of postdoctoral, postgraduate and clinical-observer trainees.

Professional service

  • 2026NIH peer reviewer, Vaccines Against Infectious Diseases study section
  • CurrentAssociate Editor, Frontiers in Microbiology and Frontiers in Aging
  • CurrentSpecial Issue Editor, Frontiers in Microbiology and Vaccines
  • CurrentEditorial Board, International Journal of Genetics and Genomics
  • CurrentRegional Representative, West Coast USA, International Society for Vaccines
  • CurrentInternational Committee Member, American Society for Histocompatibility and Immunogenetics
  • CurrentMember, UCI Institutional Biosafety Committee and Maximum Allowable Quantities Steering Committee
  • OngoingReviewer of more than 150 manuscripts, reviews and meta-analyses for journals including Frontiers in Immunology, Frontiers in Medicine, Frontiers in Pharmacology, Gene, Gene Reports, Heliyon, International Journal of Immunogenetics and Meta Gene

Memberships

American Association of Immunologists; American Society of Human Genetics; European Society of Human Genetics; American Society for Histocompatibility and Immunogenetics; American Society of Nephrology; International Society for Vaccines; Sigma Xi; Indian Society of Human Genetics; Indian Science Congress Association.

Technical expertise

  • ImmunologyFlow cytometry, CyTOF, ELISpot, ELISA and Luminex, PBMC work, cell culture, transfection, western blotting
  • Genomics10x single-cell RNA-seq, bulk RNA-seq, NGS, Sanger sequencing, GWAS, microarrays, NanoString, qRT-PCR and ddPCR
  • VirologyHSV and SARS-CoV-2 assays; neutralization and plaque assays; BSL-2/3 and ABSL-2/3; mouse, hamster, guinea pig and rabbit studies
  • HistocompatibilityMolecular HLA typing (SSOP, SSP, sequencing), serological typing by complement-dependent lymphocytotoxicity, crossmatch, PRA (ELISA) and DSA testing, Luminex, mixed lymphocyte reaction, KIR genotyping and HLA ligand matching
  • Public healthGlobal Burden of Disease collaborator (IHME); CKDu field studies in tribal regions of India with GWAS, renal biopsy immunohistochemistry, trace-element and heat-stress analyses
  • Artificial intelligenceMachine learning and deep learning, interpretable and batch-aware modeling, nested cross-validation and feature attribution, data science pipelines; AI in vaccine design and preclinical testing
  • ComputationR, Python, Linux, immunoinformatics, statistical genomics, pathway analysis, sequence and protein modeling
  • GovernanceIACUC, IBC, IRB and CDC eIPP protocols; biosafety risk assessment; multidisciplinary project coordination

Software

  • 2015MASS KIR Analyzer, an in-silico tool for analyzing KIR gene content (Curr Bioinform 2015)

Selected presentations

  • 2025Invited talk and CME. HLA typing methods and crossmatch strategies in renal transplantation. Transplantation Immunology Workshop, 54th Annual Conference of the Indian Society of Nephrology, Lucknow, India
  • 2024Invited talk. Dynamics of spike-specific neutralizing antibodies across five years of emerging SARS-CoV-2 variants of concern reveal conserved epitopes that protect against severe COVID-19. Clinical and Translational Serology Task Force Round Table, Frederick National Laboratory for Cancer Research, NCI, NIH
  • 2024CME. Next-generation universal coronavirus vaccines. Indian Association of Tropical Parasitology, Uttar Pradesh Chapter
  • 2024CME. Role of HLA immunogenetics in COVID-19. Indian Society of Nephrology
  • 2022CME. COVID-19. Indian Virological Society and American Society for Microbiology
  • 2021Posters (2). iNKT1 cells in HSV-1 infected cornea; CD8 T-cell exhaustion pathways in recurrent ocular herpes. ARVO Annual Meeting
  • 2019Posters (3). HLA-DQB1*0601 and rheumatoid arthritis, ACR/ARP Annual Meeting, Atlanta; FGF1 (TTHX1114) in primary ocular herpes and inflammasome pathways in herpetic keratitis, ARVO, Vancouver
  • 2018Talk. Genome-wide analysis of genetic risks and immunological pathways in chronic kidney disease of unknown etiology. 18th Indian Society of Nephrology Conference, Bhubaneswar
  • 2016Talk. Association of KIR3DL1/3DS1 alleles with renal allograft rejection. 26th International Congress of The Transplantation Society, Hong Kong
  • 2016Posters (3). miRNA SNPs and allograft rejection (ISOT, Chandigarh); HLA-DQ6.1 and rheumatoid arthritis (IRACON, Kochi); microRNAs in end-stage renal disease (ISNCON, Mumbai)
  • 2015Talk. KIR associations with childhood acute lymphoblastic leukemia. 12th International Summer School on Immunogenetics (ASHI and APHIA), Ayutthaya, Thailand
  • 2012 to 2014Posters. American Transplant Congress, Boston (2012); World Congress of Internal Medicine, Santiago (2012); ISNCON, Kolkata (2014)

Media

Metrics

Google Scholar (October 2026): 54,370 citations, h-index 32, i10-index 56. ORCID 0000-0003-3986-890X. Scopus Author ID 57212263375. LinkedIn: linkedin.com/in/swayam-prakash-ms-phd-frsb-b522a821a.

Publications (98)

Newest first. Includes 11 preprints and 20 Global Burden of Disease consortium papers.

  1. Karan S, Prakash S, Maurya C, LeNg SX, BenMohamed L. Tissue-Resident and Effector-Memory Lymphocyte Recruitment to the Ocular Mucosa Requires CCL28/CCR10 Signaling During Recurrent HSV-1 Infection bioRxiv [Preprint]. 2026 Sep 20;. doi: 10.64898/2026.09.14.751393; PMID: 42779628; PMC13596252
  2. Srivastava R, Prakash S, Karan S, BenMohamed L. High Frequencies of Senescent and Exhausted Natural Killer Cells and SARS-CoV-2-Specific Memory CD8(+) T Cells Distinguish Critically Ill from Asymptomatic Unvaccinated COVID-19 Patients Viruses. 2026 Aug 28; 18(9). doi: 10.3390/v18090940; PMID: 42797773; PMC13612035
  3. Prakash S, Dhanushkodi NR, Quadiri A, Vahed H, Chentoufi AA, Coulon PG, Ibraim IC, El Babsiri A, Tifrea DF, Figueroa CJ, Gil D, Ulmer JB, BenMohamed L. Multi-antigen coronavirus vaccine induces potent and durable cross-protection against multiple SARS-CoV-2 variants NPJ Vaccines. 2026 Aug 18; 11(1). doi: 10.1038/s41541-026-01549-y; PMID: 42834091; PMC13638991
  4. Rahman A, Prakash S, Karan S, Ng SXL, Park G, Maurya C, Garcia A, Intharachalit K, Hwang J, Tang CTY, Chow RA, Suoth BS, Liao EJ, BenMohamed L. CCL25 chemokine promotes antiviral tissue resident CD4(+) and CD8(+) effector memory T(RM) cells associated with a reduction of ocular herpes infection and disease: a potential gut-eye axis in herpes immunity Front Immunol. 2026; 17::1872553. doi: 10.3389/fimmu.2026.1872553; PMID: 42540065; PMC13425080
  5. Lekbach Y, Prakash S, Vahed H, Quadiri A, Rahman A, El Fatimi EH, Dorotta JC, Suoth BS, Maurya C, Garcia A, Park G, BenMohamed L. NF-κB/OCT-1 Mediated Upregulation of CXCL14 Chemokine Mobilizes Mucosal Effector Memory CD44+CD62L-CD4+ and CD8+ TEM Cells, and NK Cells Associated with Protection Against Genital Herpes Pathog Immun. 2026; 11(1)::191-222. doi: 10.20411/pai.v11i1.879; PMID: 42524223; PMC13410923
  6. Vahed H, Chentoufi AA, Prakash S, Quadiri A, Karan S, Lekbach Y, Omorogieva E, Patel S, Tadros J, Liao EJ, Lau L, Tifrea DF, Ibraim IC, BenMohamed L. CXCL13/CXCR5 chemokine axis promotes antiviral CXCR5+CD19+ B Cells and follicular/effector CXCR5+CD4+ T Cells in the lungs associated with protection from severe and fatal COVID-19 following infection with pathogenic SARS-CoV-2 Delta variant J Immunol. 2026 Mar 17; 215(3). doi: 10.1093/jimmun/vkag017; PMID: 41847859
  7. Lekbach Y, Chentoufi AA, Prakash S, Karan S, Quadiri A, Hormi-Carver KK, Dorotta JC, BenMohamed L. Role of mucosal chemokines in the development of tissue-resident CD4(+) and CD8(+) T(RM) cells to fend off herpes simplex infections Front Immunol. 2026; 17::1661640. doi: 10.3389/fimmu.2026.1661640; PMID: 41798926; PMC12961821
  8. Karan S, Prakash S, Chentoufi AA, Intharachalit K, LeNg SX, Hwang J, Maurya C, BenMohamed L. A Tissue-Targeted Immunotherapy Protects Against Recurrent Ocular Herpes Infection and Disease, and Alleviates the Associated Cognitive, Behavioral, and Social Deficits in a 'Humanized' HLA Transgenic Mouse Model of UVB-Induced Reactivation bioRxiv [Preprint]. 2026 Sep 27. doi: 10.64898/2026.09.27.754856
  9. Elfatimi E, Lekbach Y, Prakash S, Karan S, Dorotta JC, Garcia A, Suoth BS, Maurya C, Omorogieva EY, Ng SXL, Liao EJ, Chow RA, BenMohamed L. Artificial intelligence-, organoid-, and organ-on-chip-powered models to improve pre-clinical animal testing of vaccines and immunotherapeutics: potential, progress, and challenges Front Artif Intell. 2025; 8::1681106. doi: 10.3389/frai.2025.1681106; PMID: 41244612; PMC12615408
  10. Prakash S, Karan S, Lekbach Y, Tifrea DF, Figueroa CJ, Ulmer JB, Young JF, Glenn G, Gil D, Jones TM, Redfield RR, BenMohamed L. Insights into Persistent SARS-CoV-2 Reservoirs in Chronic Long COVID Viruses. 2025 Sep 27; 17(10). doi: 10.3390/v17101310; PMID: 41157582; PMC12568064
  11. Quadiri A, Lekbach Y, Elfatimi E, Prakash S, Vahed H, Karan S, Rehman A, Ng SXL, Maurya C, Chow R, BenMohamed L. The Path Towards Effective Long-Lasting Tissue-Targeted Prime/Pull/Keep Herpes Simplex Therapeutic Vaccines Vaccines (Basel). 2025 Aug 27; 13(9). doi: 10.3390/vaccines13090908; PMID: 41012114; PMC12474029
  12. Prakash S, Dhanushkodi NR, Quadiri A, Vahed H, Chentoufi AA, Coulon PG, Ibraim IC, Babsiri AE, Tifrea DF, Figueroa CJ, Gil D, Ulmer JB, BenMohamed L. A Multi-Antigen Broad-Spectrum Coronavirus Vaccine Induces Potent and Durable Cross-Protection Against Infection and Disease Caused by Multiple SARS-CoV-2 Variants Res Sq [Preprint]. 2025 Aug 20;. doi: 10.21203/rs.3.rs-7208748/v1; PMID: 40894020; PMC12393516
  13. Elfatimi E, Lekbach Y, Prakash S, BenMohamed L. Artificial intelligence and machine learning in the development of vaccines and immunotherapeutics-yesterday, today, and tomorrow Front Artif Intell. 2025; 8::1620572. doi: 10.3389/frai.2025.1620572; PMID: 40756816; PMC12313644
  14. Vahed H, Prakash S, Quadiri A, Ibraim IC, Omorogieva E, Patel S, Tadros J, Liao EJ, Lau L, Chentoufi AA, Nesburn AB, Kuppermann BD, Ulmer JB, Gil D, BenMohamed L. A pan-beta-coronavirus vaccine bearing conserved and asymptomatic B- and T-cell epitopes protects against highly pathogenic Delta and highly transmissible Omicron SARS-CoV-2 variants Hum Vaccin Immunother. 2025 Dec; 21(1)::2527438. doi: 10.1080/21645515.2025.2527438; PMID: 40613499; PMC12233765
  15. Chentoufi AA, Prakash S, Vahed H, Karan S, Quadiri A, Nesburn AB, BenMohamed L. A tissue-targeted prime/pull/keep therapeutic herpes simplex virus vaccine protects against recurrent ocular herpes infection and disease in HLA-A*0201 transgenic rabbits J Virol. 2025 May 20; 99(5)::e0013525. doi: 10.1128/jvi.00135-25; PMID: 40207928; PMC12090795
  16. Quadiri A, Prakash S, Vahed H, Tadros JM, Sun M, Hormi-Carver KK, Patel SJ, BenMohamed L. Therapeutic mucosal vaccination of herpes simplex virus type 2 infected guinea pigs with an adenovirus-based vaccine expressing the ribonucleotide reductase 2 and glycoprotein D induces local tissue-resident CD4+ and CD8+ TRM cells associated with protection against recurrent genital herpes Front Immunol. 2025; 16::1568258. doi: 10.3389/fimmu.2025.1568258; PMID: 40207227; PMC11979635
  17. Zayou L, Prakash S, Vahed H, Dhanushkodi NR, Quadiri A, Belmouden A, Lemkhente Z, Chentoufi A, Gil D, Ulmer JB, BenMohamed L. Dynamics of spike-specific neutralizing antibodies across five-year emerging SARS-CoV-2 variants of concern reveal conserved epitopes that protect against severe COVID-19 Front Immunol. 2025; 16::1503954. doi: 10.3389/fimmu.2025.1503954; PMID: 40040708; PMC11876060
  18. Quadiri A, Prakash S, Zayou L, Dhanushkodi NR, Chilukuri A, Ryan G, Wang K, Vahed H, Chentoufi AA, BenMohamed L. A Spike-Based mRNA Vaccine Encapsulated in Phospholipid 1,2-Dioleoyl-sn-Glycero-3-PhosphoEthanolamine Containing Lipid Nanoparticles Induced Potent B- and T-Cell Responses Associated with Protection Against SARS-CoV-2 Infection and COVID-19-like Symptoms in Hamsters Vaccines (Basel). 2025 Jan 8; 13(1). doi: 10.3390/vaccines13010047; PMID: 39852826; PMC11769137
  19. Zayou L, Prakash S, Vahed H, Dhanushkodi NR, Quadiri A, Belmouden A, Lemkhente Z, Chentoufi A, Gil D, Ulmer JB, BenMohamed L. Dynamics of Spike-Specific Neutralizing Antibodies Across Five-Year Emerging SARS-CoV-2 Variants of Concern Reveal Conserved Epitopes that Protect Against Severe COVID-19 bioRxiv [Preprint]. 2024 Sep 25;. doi: 10.1101/2024.09.22.614369; PMID: 39386567; PMC11463540
  20. Ranjan P, Ghoshal U, Prakash S, Pandey A, Shukla R. Genetic variability of histidine-rich protein 2 repeat sequences: Misleading factor in true determination of Plasmodium falciparum in different population Indian J Med Microbiol. 2024 May-Jun; 49::100616. doi: 10.1016/j.ijmmb.2024.100616; PMID: 38761865
  21. Quadiri A, Prakash S, Dhanushkodi NR, Singer M, Zayou L, Shaik AM, Sun M, Suzer B, Lau LSL, Chilukurri A, Vahed H, Schaefer H, BenMohamed L. Therapeutic prime/pull vaccination of HSV-2-infected guinea pigs with the ribonucleotide reductase 2 (RR2) protein and CXCL11 chemokine boosts antiviral local tissue-resident and effector memory CD4(+) and CD8(+) T cells and protects against recurrent genital herpes J Virol. 2024 May 14; 98(5)::e0159623. doi: 10.1128/jvi.01596-23; PMID: 38587378; PMC11092353
  22. Coulon PG, Prakash S, Dhanushkodi NR, Srivastava R, Zayou L, Tifrea DF, Edwards RA, Figueroa CJ, Schubl SD, Hsieh L, Nesburn AB, Kuppermann BD, Bahraoui E, Vahed H, Gil D, Jones TM, Ulmer JB, BenMohamed L. High frequencies of alpha common cold coronavirus/SARS-CoV-2 cross-reactive functional CD4(+) and CD8(+) memory T cells are associated with protection from symptomatic and fatal SARS-CoV-2 infections in unvaccinated COVID-19 patients Front Immunol. 2024; 15::1343716. doi: 10.3389/fimmu.2024.1343716; PMID: 38605956; PMC11007208
  23. Prakash S, Dhanushkodi NR, Singer M, Quadiri A, Zayou L, Vahed H, Coulon PG, Ibraim IC, Tafoya C, Hitchcock L, Landucci G, Forthal DN, El Babsiri A, Tifrea DF, Figueroa CJ, Nesburn AB, Kuppermann BD, Gil D, Jones TM, Ulmer JB, BenMohamed L. A Broad-Spectrum Multi-Antigen mRNA/LNP-Based Pan-Coronavirus Vaccine Induced Potent Cross-Protective Immunity Against Infection and Disease Caused by Highly Pathogenic and Heavily Spike-Mutated SARS-CoV-2 Variants of Concern in the Syrian Hamster Model bioRxiv [Preprint]. 2024 Feb 15;. doi: 10.1101/2024.02.14.580225; PMID: 38405942; PMC10888826
  24. Dhanushkodi NR, Prakash S, Quadiri A, Zayou L, Srivastava R, Shaik AM, Suzer B, Ibraim IC, Landucci G, Tifrea DF, Singer M, Jamal L, Edwards RA, Vahed H, Brown L, BenMohamed L. Antiviral and Anti-Inflammatory Therapeutic Effect of RAGE-Ig Protein against Multiple SARS-CoV-2 Variants of Concern Demonstrated in K18-hACE2 Mouse and Syrian Golden Hamster Models J Immunol. 2024 Feb 15; 212(4)::576-585. doi: 10.4049/jimmunol.2300392; PMID: 38180084
  25. Prakash S, Dhanushkodi NR, Zayou L, Ibraim IC, Quadiri A, Coulon PG, Tifrea DF, Suzer B, Shaik AM, Chilukuri A, Edwards RA, Singer M, Vahed H, Nesburn AB, Kuppermann BD, Ulmer JB, Gil D, Jones TM, BenMohamed L. Cross-protection induced by highly conserved human B, CD4(+), and CD8(+) T-cell epitopes-based vaccine against severe infection, disease, and death caused by multiple SARS-CoV-2 variants of concern Front Immunol. 2024; 15::1328905. doi: 10.3389/fimmu.2024.1328905; PMID: 38318166; PMC10839970
  26. Zayou L, Prakash S, Dhanushkodi NR, Quadiri A, Ibraim IC, Singer M, Salem A, Shaik AM, Suzer B, Chilukuri A, Tran J, Nguyen PC, Sun M, Hormi-Carver KK, Belmouden A, Vahed H, Gil D, Ulmer JB, BenMohamed L. A multi-epitope/CXCL11 prime/pull coronavirus mucosal vaccine boosts the frequency and the function of lung-resident memory CD4(+) and CD8(+) T cells and enhanced protection against COVID-19-like symptoms and death caused by SARS-CoV-2 infection J Virol. 2023 Dec 21; 97(12)::e0109623. doi: 10.1128/jvi.01096-23; PMID: 38038432; PMC10734477
  27. Quadiri A, Prakash S, Dhanushkodi NR, Singer M, Zayou L, Shaik AM, Sun M, Suzer B, Lau L, Chilukurri A, Vahed H, Schaefer H, BenMohamed L. Therapeutic Prime/Pull Vaccination of HSV-2 Infected Guinea Pigs with the Ribonucleotide Reductase 2 (RR2) Protein and CXCL11 Chemokine Boosts Antiviral Local Tissue-Resident and Effector Memory CD4(+) and CD8(+) T Cells and Protects Against Recurrent Genital Herpes bioRxiv [Preprint]. 2023 Aug 9;. doi: 10.1101/2023.08.08.552454; PMID: 37609157; PMC10441333
  28. Dhanushkodi NR, Prakash S, Quadiri A, Zayou L, Srivastava R, Tran J, Dang V, Shaik AM, Chilukurri A, Suzer B, Vera P, Sun M, Nguyen P, Lee A, Salem A, Loi J, Singer M, Nakayama T, Vahed H, Nesburn AB, BenMohamed L. Mucosal CCL28 Chemokine Improves Protection against Genital Herpes through Mobilization of Antiviral Effector Memory CCR10+CD44+ CD62L-CD8+ T Cells and Memory CCR10+B220+CD27+ B Cells into the Infected Vaginal Mucosa J Immunol. 2023 Jul 1; 211(1)::118-129. doi: 10.4049/jimmunol.2300093; PMID: 37222480; PMC10330291
  29. Prakash S, Dhanushkodi NR, Zayou L, Ibraim IC, Quadiri A, Coulon PG, Tifrea DF, Suzler B, Amin M, Chilukuri A, Edwards RA, Vahed H, Nesburn AB, Kuppermann BD, Ulmer JB, Gil D, Jones TM, BenMohamed L. Cross-Protection Induced by Highly Conserved Human B, CD4(+,) and CD8(+) T Cell Epitopes-Based Coronavirus Vaccine Against Severe Infection, Disease, and Death Caused by Multiple SARS-CoV-2 Variants of Concern bioRxiv [Preprint]. 2023 May 24;. doi: 10.1101/2023.05.24.541850; PMID: 37292861; PMC10245830
  30. Dhanushkodi NR, Prakash S, Quadiri A, Zayou L, Singer M, Takashi N, Vahed H, BenMohamed L. High Frequencies of Antiviral Effector Memory T(EM) Cells and Memory B Cells Mobilized into Herpes Infected Vaginal Mucosa Associated With Protection Against Genital Herpes bioRxiv [Preprint]. 2023 May 24;. doi: 10.1101/2023.05.23.542021; PMID: 37292784; PMC10245907
  31. Prasad N, Yadav B, Prakash S, Yadav D, Singh A, Gautam S, Bhadauria D, Kaul A, Patel MR, Behera MR, Kushwaha RS, Yachha M. Association of Human Leucocyte Antigen Polymorphism with Coronavirus Disease 19 in Renal Transplant Recipients Vaccines (Basel). 2022 Oct 30; 10(11). doi: 10.3390/vaccines10111840; PMID: 36366349; PMC9697220
  32. Srivastava R, Dhanushkodi N, Prakash S, Coulon PG, Vahed H, Zayou L, Quadiri A, BenMohamed L. High Frequencies of Phenotypically and Functionally Senescent and Exhausted CD56(+)CD57(+)PD-1(+) Natural Killer Cells, SARS-CoV-2-Specific Memory CD4(+) and CD8(+) T cells Associated with Severe Disease in Unvaccinated COVID-19 Patients bioRxiv [Preprint]. 2022 Jul 27;. doi: 10.1101/2022.07.26.501655; PMID: 35923316; PMC9347283
  33. Chentoufi AA, Dhanushkodi NR, Srivastava R, Prakash S, Coulon PA, Zayou L, Vahed H, Chentoufi HA, Hormi-Carver KK, BenMohamed L. Combinatorial Herpes Simplex Vaccine Strategies: From Bedside to Bench and Back Front Immunol. 2022; 13::849515. doi: 10.3389/fimmu.2022.849515; PMID: 35547736; PMC9082490
  34. Dhanushkodi NR, Prakash S, Srivastava R, Coulon PA, Arellano D, Kapadia RV, Fahim R, Suzer B, Jamal L, Vahed H, BenMohamed L. Antiviral CD19(+)CD27(+) Memory B Cells Are Associated with Protection from Recurrent Asymptomatic Ocular Herpesvirus Infection J Virol. 2022 Mar 9; 96(5)::e0205721. doi: 10.1128/jvi.02057-21; PMID: 34985998; PMC8906405
  35. Dhanushkodi N, Prakash S, Srivastava R, Coulon PGA, Vahed H, Zayou L, Quadiri A, Schaefer H, BenMohamed L. A Prime/Pull RR2/CXCL11 Therapeutic Vaccine that Bolsters the Number and Function of Dorsal Root Ganglia Tissue-Resident HSV-Specific CD8+ TRM Cells Protects Latently Infected Guinea Pigs from Recurrent Genital Herpes bioRxiv [Preprint]. 2022. doi: 10.1101/2022.07.22.501208
  36. Dhanushkodi NR, Srivastava R, Coulon PA, Prakash S, Roy S, Bagnol D, David ED, BenMohamed L. Healing of Ocular Herpetic Disease Following Treatment With an Engineered FGF-1 Is Associated With Increased Corneal Anti-Inflammatory M2 Macrophages Front Immunol. 2021; 12::673763. doi: 10.3389/fimmu.2021.673763; PMID: 34054858; PMC8158292
  37. Prakash S, Srivastava R, Coulon PG, Dhanushkodi NR, Chentoufi AA, Tifrea DF, Edwards RA, Figueroa CJ, Schubl SD, Hsieh L, Buchmeier MJ, Bouziane M, Nesburn AB, Kuppermann BD, BenMohamed L. Genome-Wide B Cell, CD4(+), and CD8(+) T Cell Epitopes That Are Highly Conserved between Human and Animal Coronaviruses, Identified from SARS-CoV-2 as Targets for Preemptive Pan-Coronavirus Vaccines J Immunol. 2021 Jun 1; 206(11)::2566-2582. doi: 10.4049/jimmunol.2001438; PMID: 33911008; PMC8722450
  38. Vipin VP, Zaidi G, Watson K, G Colman P, Prakash S, Agrawal S, Bhatia V, Dabadghao P, Bhatia E. High prevalence of idiopathic (islet antibody-negative) type 1 diabetes among Indian children and adolescents Pediatr Diabetes. 2021 Feb; 22(1)::47-51. doi: 10.1111/pedi.13066; PMID: 32558116
  39. Prakash S, Srivastava R, Coulon PG, Dhanushkodi NR, Chentoufi AA, Tifrea DF, Edwards RA, Figueroa CJ, Schubl SD, Hsieh L, Buchmeier MJ, Bouziane M, Nesburn AB, Kuppermann BD, BenMohamed L. Genome-Wide Asymptomatic B-Cell, CD4 (+) and CD8 (+) T-Cell Epitopes, that are Highly Conserved Between Human and Animal Coronaviruses, Identified from SARS-CoV-2 as Immune Targets for Pre-Emptive Pan-Coronavirus Vaccines bioRxiv [Preprint]. 2020 Sep 28;. doi: 10.1101/2020.09.27.316018; PMID: 33024971; PMC7536874
  40. 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  81. Prakash S, Agrawal S, Kumar S, Prasad N. Impact of vascular endothelial growth factor single nucleotide polymorphism association on acute renal allograft rejection Nephron. 2015; 129(2)::91-6. doi: 10.1159/000368700; PMID: 25659610
  82. Alam S, Rangaswamy D, Prakash S, Sharma RK, Khan MI, Sonawane A, Agrawal S. Impact of killer immunoglobulin-like receptor-human leukocyte antigens ligand incompatibility among renal transplantation Indian J Nephrol. 2015 Jan-Feb; 25(1)::27-33. doi: 10.4103/0971-4065.134655; PMID: 25684869; PMC4323909
  83. Agrawal D, Prakash S, Misra MK, Phadke SR, Agrawal S. Implication of HLA-G 5' upstream regulatory region polymorphisms in idiopathic recurrent spontaneous abortions Reprod Biomed Online. 2015 Jan; 30(1)::82-91. doi: 10.1016/j.rbmo.2014.09.015; PMID: 25457193
  84. Pandey M, Sarangi AN, Prakash S, Agrawal S. MASS KIR Analyzer: An In Silico Approach for Analyzing the Killer Immunoglobulin Receptor Gene Content and its Diversity Curr Bioinform. 2015 10(3):292-298. doi: 10.2174/1574893609999140918200855
  85. Misra MK, Pandey SK, Kapoor R, Sharma RK, Kapoor R, Prakash S, Agrawal S. HLA-G gene expression influenced at allelic level in association with end stage renal disease and acute allograft rejection Hum Immunol. 2014 Aug; 75(8)::833-9. doi: 10.1016/j.humimm.2014.06.005; PMID: 24929145
  86. Prakash S, Alam S, Bharadwaj U, Aggarwal A, Mishra RN, Agrawal S. Associations of killer cell immunoglobulin like receptors with rheumatoid arthritis among North Indian population Hum Immunol. 2014 Aug; 75(8)::802-7. doi: 10.1016/j.humimm.2014.05.014; PMID: 24912006
  87. Prakash S, Agrawal S, Vahed H, Ngyuen M, BenMohamed L, Gupta S, Agrawal A. Dendritic cells from aged subjects contribute to chronic airway inflammation by activating bronchial epithelial cells under steady state Mucosal Immunol. 2014 Nov; 7(6)::1386-94. doi: 10.1038/mi.2014.28; PMID: 24759206; PMC4205198
  88. Prakash S, Alam S, Faridi RM, Sonawane A, Agrawal S. Killer immunoglobulin like receptor gene content diversity among Northern Indian population Ann Hum Biol. 2014 Nov-Dec; 41(6)::540-7. doi: 10.3109/03014460.2014.899624; PMID: 24689793
  89. Chauhan TS, Prakash S, Sharma RK, Agrawal S. Correlation of activating Killer immunoglobulin like receptor genes with the rate of cytomegalovirus infection in renal transplantation cases J Genet Genome Res. 2014 1(1).
  90. Agrawal S, Prakash S, Sharma RK. Genetics of familial focal segmental glomerulosclerosis Clinical Queries: Nephrology. 2014 3(2-4):57-72.
  91. Misra MK, Prakash S, Kapoor R, Pandey SK, Sharma RK, Agrawal S. Association of HLA-G promoter and 14-bp insertion-deletion variants with acute allograft rejection and end-stage renal disease Tissue Antigens. 2013 Nov; 82(5)::317-26. doi: 10.1111/tan.12210; PMID: 24131018
  92. Mishra K, Behari A, Kapoor VK, Khan MS, Prakash S, Agrawal S. Vascular endothelial growth factor single-nucleotide polymorphism in gallbladder cancer J Gastroenterol Hepatol. 2013 Oct; 28(10)::1678-85. doi: 10.1111/jgh.12343; PMID: 23962084
  93. Prakash S, Alam S, Sharma RK, Sonawane A, Imran M, Agrawal S. Distribution of Killer cell immunoglobulin like receptor genes in end stage renal disease among North Indian population Hum Immunol. 2013 Oct; 74(10)::1339-45. doi: 10.1016/j.humimm.2013.06.015; PMID: 23777934
  94. Verma PK, Prakash S, Parveen F, Faridi RM, Agrawal S. Genetic association of adipokine and UCP2 polymorphism with recurrent miscarriage among non-obese women Reprod Biomed Online. 2012 Nov; 25(5)::527-35. doi: 10.1016/j.rbmo.2012.07.006; PMID: 22995745
  95. Gupta R, Prakash S, Parveen F, Agrawal S. Association of CTLA-4 and TNF-α polymorphism with recurrent miscarriage among North Indian women Cytokine. 2012 Nov; 60(2)::456-62. doi: 10.1016/j.cyto.2012.05.018; PMID: 22727980
  96. Prakash S, Prasad N, Sharma RK, Faridi RM, Agrawal S. Vascular endothelial growth factor gene polymorphisms in North Indian patients with end stage renal disease Cytokine. 2012 May; 58(2)::261-6. doi: 10.1016/j.cyto.2012.01.020; PMID: 22370607
  97. Agrawal S, Parveen F, Faridi RM, Prakash S. Interleukin-1 gene cluster variants and recurrent pregnancy loss among North Indian women: retrospective study and meta-analysis Reprod Biomed Online. 2012 Mar; 24(3)::342-51. doi: 10.1016/j.rbmo.2011.11.021; PMID: 22285242
  98. Aggarwal S, Parveen F, Faridi RM, Phadke S, Borkar M, Agrawal S. Vascular endothelial growth factor gene polymorphisms in North Indian patients with recurrent miscarriages Reprod Biomed Online. 2011 Jan; 22(1)::59-64. doi: 10.1016/j.rbmo.2010.08.005; PMID: 21126911

References

Available on request.